Phylogenetic Study of Lempuk Fish (Gobiopterus sp.) in Ranu Grati Based on Mitochondrial DNA Sequence of Cytochrome Oxidase I (COI) Barcoding Region

Journal of Aquaculture and Fish Health

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Title Phylogenetic Study of Lempuk Fish (Gobiopterus sp.) in Ranu Grati Based on Mitochondrial DNA Sequence of Cytochrome Oxidase I (COI) Barcoding Region
 
Creator Faqih, Abd Rahem
Kusuma, Wahyu Endra
Anitasari, Septi
Sari, Dian Kartika
 
Subject
Ranu Grati, Lempuk fish, COI, Phylogenetic, Genetic distance
 
Description Lempuk fish (Gobiopterus sp.) is one of the local species in Ranu Grati. The high level of Lempuk fishing and the low level of awareness of Grati community on the importance of conservation and domestication efforts, as well as the taxonomy of the fish itself have threatened the population. Therefore, long-term efforts should be undertaken to preserve and identify the origin of Lempuk fish by conducting a molecular phylogenetic study based on COI. This study aimed to determine, analyze and describe the kinship and phylogenetic relationships of Lempuk fish (Gobiopterus sp.). This study used a descriptive method, starting from the specimen collection, extraction by the Phenol-Chloroform method and amplification by the PCR method, to the screening process. The data analysis method used the MEGA 5 application. Phylogenetic study used the Maximum Likelihood method with a bootstrap value of 1.000 times. The results showed that the intra-population genetic distance of Lempuk fish is low at 0.00%. Genetic distance between the population of Lempuk fish is relatively high with G. brachypterus from Malaysia of 22.4%, Central Java of 21.5%, and India of 21.4% and with G. lacustris from Malaysia of 22.5%, the Philippines of 21.6% %, Thailand of 19.7%, and with G. chuno and G. semivestitus of 21.2% and 23.6% accordingly. The phylogenetic study obtained showed the formation of a separate group that is different between Lempuk fish group and other Gobiopterus fish, supported by a bootsrap value of 99%.
 
Publisher Department of Aquaculture
 
Contributor
 
Date 2021-08-31
 
Type info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
Peer-reviewed Article
 
Format application/pdf
 
Identifier https://e-journal.unair.ac.id/JAFH/article/view/23137
10.20473/jafh.v10i3.23137
 
Source Journal of Aquaculture and Fish Health; Vol 10, No 3 (2021): JAFH Vol. 10 No. 3 September 2021; 356-364
2528-0864
2301-7309
 
Language eng
 
Relation https://e-journal.unair.ac.id/JAFH/article/view/23137/15397
 
Rights Copyright (c) 2021 Abd Rahem Faqih
http://creativecommons.org/licenses/by-nc-sa/4.0
 

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