ITS2 for the identification of Calliphoridae (Diptera: Calliphoridae) of forensic importance in Colombia

Acta Biológica Colombiana

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Title ITS2 for the identification of Calliphoridae (Diptera: Calliphoridae) of forensic importance in Colombia
ITS2 para la identificación de Califóridos (Diptera: Calliphoridae) de importancia forense en Colombia
 
Creator Lea-Charris, Edison R.
Wolff, Martha
Castro, Lyda R.
 
Subject nuclear genome
phylogeny
post-mortem interval
restriction enzymes.
códigos de barra genéticos
enzimas de restricción
intervalo post-mortem
genoma nuclear.
Genetica
Ciencias Biológicas
Biología Molecular
 
Description Forensic entomology is a discipline that uses insects to obtain useful information for the determination of the postmortem interval (PMI). Flies of the family Calliphoridae are extensively used for this purpose, however, the identification of these flies can be difficult when the individual is not an adult or when it is incomplete. In the present work, we tested the utility of the ITS2 region of the nuclear genome for the identification of Calliphoridae species in Colombia using three approaches: comparing genetic distances using the barcoding methodology, with a phylogenetic reconstruction, and with PCR-RFLPs. We sequenced 520 bp in 44 individuals belonging to 16 species of califorids. Intraspecific and interspecific distance values were calculated using the K2P model. The intraspecific distance values ranged between 0 and 0.252 %, while the interspecific distance values ranged between 3.6 and 18.9 %, indicating that this gene can be used as a genetic barcode for the identification of species of the Calliphoridae family. Both the Neighbour-Joining and Bayesian analyses recovered 90 % of the genera as monophyletic, with pp values between 0.89 and 1. Blepharicnema splendens was always recovered within the Lucilia genera. Based on the obtained sequences we used the NEBCutter application to identify four restriction enzymes that cut in a differential way and generated useful patterns for the identification of the species. The enzymes were successfully tested and confirmed the utility of this technique as a fast way to identify species of Calliphoridae in Colombia.
La entomología forense es una disciplina que utiliza insectos para obtener información útil en la determinación del intervalo postmortem (IPM). Las moscas de la familia Calliphoridae son muy utilizadas en entomología forense, sin embargo, su identificación a nivel de especie puede dificultarse cuando el individuo se encuentra incompleto o en estadio inmaduro. En el presente trabajo, se evaluó el potencial de la región ITS2 del genoma nuclear para la identificación de especies de Calliphoridae en Colombia utilizando tres aproximaciones: comparando distancias genéticas utilizando la metodología de códigos de barra, haciendo una reconstrucción filogenética, y con enzimas de restricción (PCR-RFLPs). Se secuenciaron un total de 520 pb en 44 individuos pertenecientes a 16 especies. Se calcularon los valores de distancia intraespecífica e interespecíficas utilizando el modelo K2P. Los valores de distancia intraespecífica oscilaron entre 0 y 0,252 %, mientras que las distancias interespecíficas fluctuaron entre 3,6 y 18,9 %, evidenciándose que esta técnica puede ser utilizada como código de barras genético en la identificación de especies de la familia Calliphoridae. Tanto en los análisis de Neighbour-Joining como en los análisis bayesianos el 90 % de los géneros presentan una monofilia sustentada en probabilidad posterior de 0,89 a 1. En todos los casos la especie Blepharicnema splendens agrupa con el género Lucilia. Con base en las secuencias obtenidas se utilizó la aplicación NEBCutter para identificar cuatro enzimas de restricción las cuales se probaron en el laboratorio y se comprobó su utilidad para la identificación rápida de especies de Calliphoridae en Colombia.
 
Publisher Universidad Nacional de Colombia - Sede Bogotá - Faculdad de Ciencias - Departamento de Biología
 
Date 2016-09-01
 
Type info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
 
Format application/pdf
text/html
 
Identifier https://revistas.unal.edu.co/index.php/actabiol/article/view/55085
10.15446/abc.v21n3.55085
 
Source Acta Biológica Colombiana; Vol. 21 Núm. 3 (2016); 543-553
Acta Biológica Colombiana; Vol. 21 No. 3 (2016); 543-553
1900-1649
0120-548X
 
Language spa
 
Relation https://revistas.unal.edu.co/index.php/actabiol/article/view/55085/pdf_art9_21%283%29
https://revistas.unal.edu.co/index.php/actabiol/article/view/55085/57612
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Rights Derechos de autor 2016 Acta Biológica Colombiana
https://creativecommons.org/licenses/by/4.0
 

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