SCREENING OF RESTRICTION ENZYMES FOR THE DEVELOPMENT OF RESTRICTION FRAGMENT-BASED, GENOMIC BIOMARKER OF ALCALIGENES JAVAENSIS

LIFE: International Journal of Health and Life-Sciences

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Field Value
 
Title SCREENING OF RESTRICTION ENZYMES FOR THE DEVELOPMENT OF RESTRICTION FRAGMENT-BASED, GENOMIC BIOMARKER OF ALCALIGENES JAVAENSIS
 
Creator Ethica, Stalis Norma
Semiarti, Endang
Raharjo, Tri Joko
Oedjijono, Oedjijono
Sulistyaningtyas, Ayu Rahmawati
Darmawati, Sri
 
Subject Restriction Enzyme
Genomic Biomarker
Alcaligenes Javaensis
Alcaligenes Faecalis
Bacterial Detection
 
Description Alcaligenes javaensis is a food-borne, Gram-negative bacterium, which has the closest relationship with Alcaligenes faecalis commonly causing contamination of clinical equipment and infection on humans. Hence, the development of a biomarker for members of genus Alcaligenes including A.javaensis is needed for early detection of this bacterium. This research aimed to screen the performance of 5 restriction enzymes consisting of EcoRV, Hind III, NotI, SalI, and BgIII as singles and in combinations to produce specific pattern of restricted, genomic DNA fragments of A.javaensis. Total DNA was first extracted from subcultured A.javaensis cells using DNA isolation kit and the obtained DNA isolate was then subjected to enzyme restrictions in vitro. Later, the restricted DNA fragments were evaluated using agarose gel electrophoresis method. Results showed that only the EcoRV-BgIII-HindIII combination within a restriction process of 18 h could produce smaller-sized DNA bands, while those from other combinations (5 enzymes as singles and their 2-combinations) could not do so. As conclucion, the combination of EcoRV-BgIII-HindIII is the most potential among the evaluated endonucleases to be used as a genomic biomarker for A.javaensis. Article DOI: https://dx.doi.org/10.20319/lijhls.2019.51.6272 This work is licensed under the Creative Commons Attribution-Non-commercial 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc/4.0/ or send a letter to Creative Commons, PO Box 1866, Mountain View, CA 94042, USA.
 
Publisher GRDS Publishing
 
Date 2019-04-09
 
Type info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
Peer-reviewed Article
 
Format application/pdf
 
Identifier https://grdspublishing.org/index.php/life/article/view/1895
 
Source LIFE: International Journal of Health and Life-Sciences; Vol 5 No 1 (2019): Regular Issue
2454-5872
 
Language eng
 
Relation https://grdspublishing.org/index.php/life/article/view/1895/3439
 
Rights Copyright (c) 2019 Stalis Norma Ethica, Endang Semiarti, Tri Joko Raharjo, Oedjijono Oedjijono, Ayu Rahmawati Sulistyaningtyas, Sri Darmawati
 

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